Alignment of amino acid sequences of WOX5 homeodomain in different plant species.

Size: px

Start display at page:

Download "Alignment of amino acid sequences of WOX5 homeodomain in different plant species."

Blanche Johns
6 years ago
Views:

1 Appendix To the article: Oshchepkova E.A., Omelyanchuk N.A., Savina M.S., Pasternak T., Kolcha nov N.A., Zemlyanskaya E.V. Systems biology analysis of the WOX5 gene and its functions in the root stem cell niche Supplement 1 1. Populus tomentosa WOX5b 2. Populus tomentosa WOX5a 3. Eucalyptus grandis 4. Arabidopsis thaliana 5. Arabidopsis lyrata 6. Camelina sativa 7. Raphanus sativus 8. Brassica napus 9. Brassica oleracea 10. Brassica rapa 11. Tarenaya hassleriana 12. Fragaria vesca 13. Morus notabilis 14. Gossypium raimondii 15. Theobroma cacao 16. Sesamum indicum 17. Glycine soja 18. Glycine max 19. Vigna radiata 20. Pisum sativum 21. Cicer arietinum 22. Solanum tuberosum 23. Solanum lycopersicum 24. Cucumis sativus 25. Cucumis melo 26. Erythranthe guttata 27. Acorus calamus 28. Zea mays Wox5A 29. Zea mays Wox5B 30. Brachypodium distachyon 31. Oryza sativa 32. Triticum aestivum WOX5c 33. Triticum aestivum WOX5a 34. Triticum aestivum WOX5b 35. Triticum monococcum 36. Triticum urartu 37. Triticum dicoccon 38. Triticum turgidum 39. Zostera marina 40. Aegilops searsii 41. Aegilops longissima 42. Aegilops tauschii 43. Aegilops sharonensis 44. Aegilops speltoides 45. Aegilops bicornis 46. Nymphaea jamesoniana 47. Amborella trichopoda 48. Pinus pinaster 49. Picea abies 50. Selaginella moellendorffii 51. Nelumbo nucifera 52. Nicotiana sylvestris 53. Nicotiana tomentosiformis 54. Nicotiana tabacum 55. Arachis duranensis 56. Arachis ipaensis 57. Cajanus cajan 58. Ziziphus jujuba 59. Gossypium hirsutum 60. Beta vulgaris 61. Capsicum annuum 62. Daucus carota Alignment of amino acid sequences of WOX5 homeodomain in different plant species. The arrow marks ESK tripeptide, which is one of the signatures distinguishing WOX5 from other WOX proteins.

2 Supplement 2 Stele Pericycle Endodermis Cortex Epidermis Quiescent centre Columella initials Cortex and endodermis initials Root cap initials Columella Lateral root cap The root apical meristem structure.

3 Supplement 3 The list of amino acid sequences of WOX5 proteins from different species used in phylogenetic analysis No Plant species Protein name GenBank/UniProt ID 1 Acorus calamus WOX5 C3W879 2 Aegilops bicornis WOX5 T1WGI2 3 Aegilops longissima WOX5 T1WHG1 4 Aegilops searsii WOX5 T1WGS9 5 Aegilops sharonensis WOX5 T1WFQ9 6 Aegilops speltoides WOX5 T1WGJ9 7 Aegilops tauschii WOX5 T1WGH7 8 Amborella trichopoda WOX5 XP_ Arabidopsis lyrata Hypothetical protein XP_ Arabidopsis thaliana WOX5 NP_ Arachis duranensis Wox5-like XP_ Arachis ipaensis Wox5-like XP_ Beta vulgaris Wox5-like XP_ Brachypodium distachyon Wox5-like A8Y7X0 15 Brassica napus WOX5 XP_ Brassica oleracea WOX5 XP_ Brassica rapa WOX5 XP_ Cajanus cajan WOX5 KYP Camelina sativa WOX5 XP_ Capsicum annuum Wox5-like XP_ Cicer arietinum Wox5-like XP_ Cucumis melo WOX5 XP_ Cucumis sativus WOX5 XP_ Daucus carota WOX5 XP_ Erythranthe guttatus WOX5 XP_ Eucalyptus grandis WOX5 XP_ Fragaria vesca WOX5 XP_ Glycine max Wox5-like XP_ Glycine soja WOX5 KHN Gossypium hirsutum WOX5 XP_ Gossypium raimondii WOX5 XP_ Morus notabilis WOX5 XP_ Nelumbo nucifera Wox5-like XP_ Nicotiana sylvestris Wox5-like XP_ Nicotiana tabacum Wox5-like XP_ Nicotiana tomentosiformis Wox5-like XP_ Nymphaea jamesoniana WOX5 C3W8A5 38 Oryza sativa Wox5/Wox9 Os01g Picea abies WOX5 R9R8K4 40 Pinus pinaster WOX5 A0A0S2CCI0 41 Pisum sativum WOX5 AEX Populus tomentosa WOX5a AHL Populus tomentosa WOX5b AHL Raphanus sativus WOX5 AHB Selaginella moellendorffii WOX5-1 hypothetical protein D8S2U5

4 End of Table Вид растения Название белка Номер в GenBank или UniProt 46 Sesamum indicum WOX5 XP_ Solanum tuberosum WOX5 XP_ Solanum lycopersicum Wox5-like XP_ Tarenaya hassleriana WOX5 XP_ Theobroma cacao WOX5 XP_ Triticum aestivum WOX5a T1WFN3 52 Triticum aestivum WOX5b D8L9N7 53 Triticum aestivum WOX5c T1WGQ3 54 Triticum dicoccon WOX5 T1WGG7 55 Triticum monococcum WOX5 T1WFP7 56 Triticum turgidum WOX5 T1WHE0 57 Triticum urartu WOX5 T1WGR3 58 Vigna radiata WOX5 XP_ Zea mays Wox5A CAM Zea mays Wox5B CAM Ziziphus jujube Wox5-like XP_ Zostera marina WOX5 KMZ73499

5 Supplement 4 Torpedo Heart Globular 8-celled Scheme of the plant development. Yellow color highlights the suspensor, which connects with the mother plant. Green color highlights the hypophysis (founder cell of the apical root meristem), which is located between the and suspensor at the globular stage.

6 Supplement 5 The list of 5 upstream regions of WOX5 genes from different species used for excision of ( 1000, +100) fragment in which TF binding sites were predicted and conservative regions were revealed No Plant species Protein name GenBank ID 1 Amborella trichopoda WOX5 LOC Arabidopsis lyrata WOX5 hypothetical protein ARALYDRAFT_ Arabidopsis thaliana WOX5 AT3G Brachypodium distachyon Wox5-like LOC Brassica napus WOX5 LOC Brassica oleracea WOX5 LOC Brassica rapa WOX5 LOC Camelina sativa WOX5 LOC Cicer arietinum Wox5-like LOC Cucumis melo WOX5 LOC Cucumis sativus WOX5 LOC Erythranthe guttatus WOX5 LOC Fragaria vesca WOX5 LOC Glycine max Wox5-like XM_ Gossypium raimondii WOX5 B456_011G Morus notabilis WOX5 L484_ Nelumbo nucifera Wox5-like LOC Nicotiana sylvestris Wox5-like LOC Nicotiana tomentosiformis Wox5-like LOC Oryza sativa Wox5/Wox9 LOC Prunus mume WOX5 LOC Selaginella moellendorffii WOX5-1 hypothetical protein SELMODRAFT_ Sesamum indicum WOX5 LOC Setaria italica WOX5 LOC Solanum tuberosum WOX5 LOC Tarenaya hassleriana WOX5 LOC Theobroma cacao WOX5 TCM_ Vigna radiata WOX5 LOC Zea mays Wox5B/Wox9 AM Zea mays Wox5/Wox2A LOC

AD HOC WORKING GROUP ON VARIETY DENOMINATIONS. Fifth Meeting Geneva, October 20, 2003

E WG-VD/5/3 English only DATE: October 10, 2003 INTERNATIONAL UNION FOR THE PROTECTION OF NEW VARIETIES OF PLANTS GENEVA AD HOC WORKING GROUP ON VARIETY DENOMINATIONS Fifth Meeting Geneva, October 20,