Electrophoretic Characterization of Water Soluble Seed Proteins and the Relationship between Some Legume Species in Nigeria

Similar documents
Assessment of divergence in electrophoretic mobility pattern of total seed protein in (Brassica juncea L.) germplasm using SDS- PAGE analysis

Identification and Classification of Pink Menoreh Durian (Durio Zibetinus Murr.) Based on Morphology and Molecular Markers

Electrophoretic Protein profile of few Pulses consumed locally in Mumbai region

WHAT OPPORTUNITIES EXIST TO GROW MARKETS FOR PULSES AND THEIR PRODUCTS

WHAT OPPORTUNITIES EXIST TO GROW MARKETS FOR PULSES AND THEIR PRODUCTS 2 JUNE 2016

Sequential Separation of Lysozyme, Ovomucin, Ovotransferrin and Ovalbumin from Egg White

A Computational analysis on Lectin and Histone H1 protein of different pulse species as well as comparative study with rice for balanced diet

Genetic diversity analysis of faba bean (Vicia faba L.) germplasms using sodium dodecyl sulfate-polyacrylamide gel electrophoresis

CARTHAMUS TINCTORIUS L., THE QUALITY OF SAFFLOWER SEEDS CULTIVATED IN ALBANIA.

Evaluating a New Rapid Technique to Assess Spring Wheat Flour Performance

Separation of Ovotransferrin and Ovomucoid from Chicken Egg White

State of the art on Phaseolus vulgaris and Phaseolus coccineus SRB (Serbia) s National Collections

Transferrin variation and evolution of Canadian barren-ground caribou Knut H. Røed 1 & D.C. Thomas 2

DRAFT REP15/PR Appendix X 1. PROPOSED DRAFT REVISION OF THE CLASSIFICATION OF FOOD AND FEED At Step 7

CHARACTERIZING THE TRADITIONAL RICE (ORYZA SATIVA L.) CULTIVARS ON THE BASIS OF SEED MORPHOLOGY AND PROTEIN CHARACTERISTICS

Polyacrylamide Gel Electrophoresis Determination of Genetic Variabilities Among 24 Underutilized Legume Accessions.

Evaluation and Genetic Diversity of Three Selected White Sapote (Casimiroa edulis) Clones under Semi-Arid Climate

Big Data and the Productivity Challenge for Wine Grapes. Nick Dokoozlian Agricultural Outlook Forum February

Chemical composition and allergic activity of bread Relationship to non-yeast microorganisms and baking temperatures-

BEEF Effect of processing conditions on nutrient disappearance of cold-pressed and hexane-extracted camelina and carinata meals in vitro 1

Bioethanol Production from Pineapple Peel Juice using Saccharomyces Cerevisiae

ABDUL GHAFOOR. Introduction

ESTIMATION OF GENETIC DIVERSITY IN WALNUT

Resistance to Soybean Rust in common bean

GENETIC DIVERSITY IN PRUNUS PERSICA L (BATSCH) REPORTED FROM MALAKAND DIVISION, KHYBER PAKHTUNKHWA, PAKISTAN

Knowing Your Nodules Results from the 2016 Monaro Legume Survey

Allergens in wine a specific detection of Casein, Egg and Lysozyme

Effects of Different Packaging Materials on the Shelf Stability of Ginger Juice

Establishment of the relationship among the three morphotypes of Cape gooseberry (Physalis peruviana L.)

Where in the Genome is the Flax b1 Locus?

Effect of intercropping on plant and soil of jackfruit grown in New Alluvial soil of West Bengal

AVOCADO GENETICS AND BREEDING PRESENT AND FUTURE

SELECTION STUDIES ON FIG IN THE MEDITERRANEAN REGION OF TURKEY

Detecting Melamine Adulteration in Milk Powder

Peanuts were cultivated throughout warm regions of South America by the time Columbus reached the New World.

COOKING PULSES 101 PRESENTED BY: CHEF JULIE HARRINGTON, RDN

is pleased to introduce the 2017 Scholarship Recipients

Enzymatic Hydrolysis of Ovomucin and the Functional and Structural Characteristics of Peptides in the Hydrolysates

Instructor: Stephen L. Love Aberdeen R & E Center 1693 S 2700 W Aberdeen, ID Phone: Fax:

BIOCHEMICAL MARKER SECALIN FOR THE SELECTION OF RUST RESISTANCE IN WHEAT BREEDING

An Economic And Simple Purification Procedure For The Large-Scale Production Of Ovotransferrin From Egg White

Analytical Traceability of Food and Feed

Growing Pigeon Peas. Cajanus Cajun

One class classification based authentication of peanut oils by fatty

EXTRACTION PROCEDURE

Yeast nuclei isolation kit. For fast and easy purification of nuclei from yeast cells.

GENOTYPIC AND ENVIRONMENTAL EFFECTS ON BREAD-MAKING QUALITY OF WINTER WHEAT IN ROMANIA

Johanna Stobbs International Representative of the US Dry Bean Council USA Dry Pea & Lentil Council

Instructor: Stephen L. Love Aberdeen R & E Center 1693 S 2700 W Aberdeen, ID Phone: Fax:

THE EFFECT OF DIFFERENT APPLICATIONS ON FRUIT YIELD CHARACTERISTICS OF STRAWBERRIES CULTIVATED UNDER VAN ECOLOGICAL CONDITION ABSTRACT

In the preparation of this Tanzania Standard assistance was derived from:

Morphometric Characterization of Coconut Germplasm Conserved at Bari

Food Safety in Wine: Removal of Ochratoxin a in Contaminated White Wine Using Commercial Fining Agents

Effect of Sowing Rate on Seed Yield and Yield Components of Narbon Vetch (Vicia narbonensis L.) Under Rainy Condition in Semi-Arid Regions of Turkey

Two New Verticillium Threats to Sunflower in North America

RESOLUTION OIV-OENO MONOGRAPH ON GLUTATHIONE

EVALUATION OF THE CHLROPLAST DNA AMONG VICIA FABA L. GERMPLASM USING RESTRICTION- SITE ANALYSIS *

Experimental results concerning the effect of photoperiod and callus culture duration on anthocyanin amount

SDS-PAGE. Resolving gel Stacking gel

Effect of N-fixation on nitrous oxide emissions in mature caragana shelterbelts

RESEARCH ON CONSERVATION, EVALUATION AND GENETIC HERITAGE EXPLOITATION OF TOMATO

Structures of Life. Investigation 1: Origin of Seeds. Big Question: 3 rd Science Notebook. Name:

WORLD PRODUCTION AND TRADE IN GRAIN LEGUMES

Determination of Melamine Residue in Milk Powder and Egg Using Agilent SampliQ Polymer SCX Solid Phase Extraction and the Agilent 1200 Series HPLC/UV

DEVELOPMENT AND SENSORY EVALUATION OF READY-TO- COOK IDLI MIX FROM BROWNTOP MILLET (Panicum ramosa)

Genetic diversity of wild Coffee (Coffea arabica) and its implication for conservation

INFLUENCE OF LIMING WITH Ca(OH) 2 AND STOCKPILING FERTILIZATION ON THE NITROGEN, PHOSPHORUS AND POTASSIUM CONTENT IN THE GRAPE OF WINE GRAPE VARIETIES

Identification of Adulteration or origins of whisky and alcohol with the Electronic Nose

ORGANOLEPTIC EVALUATION OF RECIPES BASED ON DIFFERENT VARIETIES OF MAIZE

Catalogue of published works on. Maize Lethal Necrosis (MLN) Disease

Analytical Method for Coumaphos (Targeted to agricultural, animal and fishery products)

Origin and Evolution of Artichoke Thistle in California

QUALITY CHARACTERISTICS OF CHEESE PRODUCED FROM THREE BREEDS OF CATTLE IN NIGERIA

Statistics & Agric.Economics Deptt., Tocklai Experimental Station, Tea Research Association, Jorhat , Assam. ABSTRACT

Reasons for the study

Genetic relationships between selected Turkish mulberry genotypes (Morus spp) based on RAPD markers

RUST RESISTANCE IN WILD HELIANTHUS ANNUUS AND VARIATION BY GEOGRAPHIC ORIGIN

Somchai Rice 1, Jacek A. Koziel 1, Anne Fennell 2 1

EFFECT OF COMBINED NITROGEN ON GROWTH AND NODULATION OF TWO MUNGBEAN (VIGNA RADIATA [L.] WILCZEK) CULTIVARS

Determination of wine colour by UV-VIS Spectroscopy following Sudraud method. Johan Leinders, Product Manager Spectroscopy

The legume family is second only to the grass family in terms of its importance to human nutrition.

Confectionary sunflower A new breeding program. Sun Yue (Jenny)

Further investigations into the rind lesion problems experienced with the Pinkerton cultivar

Development of Value Added Products From Home-Grown Lychee

WP Board 1054/08 Rev. 1

ANALYSIS OF THE EVOLUTION AND DISTRIBUTION OF MAIZE CULTIVATED AREA AND PRODUCTION IN ROMANIA

Research notes: Hilum color as a genetic marker in soybean crosses

Identification of haplotypes controlling seedless by genome resequencing of grape

Pakistan Journal of Life and Social Sciences

Overcoming challenges to developing varieties resistant to Sclerotinia - managing pathogen variation. Photos: Caixia Li

DEVELOPMENT AND STANDARDISATION OF FORMULATED BAKED PRODUCTS USING MILLETS

FUNCTIONAL AND TECHNOLOGICAL PROPERTIES OF OAT GRAIN AND A LINE OF PROMISING FOOD PRODUCTS ON ITS BASIS

2. Materials and methods. 1. Introduction. Abstract

Acceptability and proximate composition of some sweet potato genotypes: Implication of breeding for food security and industrial quality

Assessment of Morphological Characterization in Vegetable Cowpea Genotypes

Chapter V SUMMARY AND CONCLUSION

SENSORY ATTRIBUTES OF CEREAL AND PULSE BASED TEMPEH CHIPS

Effect of Sowing Time on Growth and Yield of Sweet Corn Cultivars

Elderberry Ripeness and Determination of When to Harvest. Patrick Byers, Regional Horticulture Specialist,

CORRELATIONS BETWEEN CUTICLE WAX AND OIL IN AVOCADOS

Transcription:

World Journal of Agricultural Sciences 10 (4): 154-162, 2014 ISSN 1817-3047 IDOSI Publications, 2014 DOI: 10.5829/idosi.wjas.2014.10.4.1816 Electrophoretic Characterization of Water Soluble Seed Proteins and the Relationship between Some Legume Species in Nigeria 1 1,2 1 C.B. Lukong, F.C. Ezebuo and M.N. Onumaerosim 1 Department of Biochemistry, Faculty of Natural Sciences, Anambra State University, Uli, Nigeria 2 Department of Biochemistry, Faculty of Biological Sciences, University of Nigeria, Nsukka, Nigeria Abstract: Legume seeds are a rich source of dietary proteins consumed by humans and livestock. In this research, a total of six species of grain legumes viz., Vigna unguiculata sub- specie unguiculata (black-eyed bean), Vigna unguiculata (patisco), Vigna unguiculata unguiculata sub- specie sesquipedalis (yardlong bean), Phaseolus vulgaris (red kidney bean), Cajanus cajan (pigeon pea) and Mucuna pruriens (velvet or devil bean) consumed in eastern Nigeria were studied to assess their genetic variability and relationship. These grains were characterized by the numerical analysis of seed protein profiles obtained by using native - and SDS- PAGE techniques. The average polymorphisms of these species were 0.00% in Native-PAGE ( -mecarptoethanol absence) and SDS-PAGE ( -mecarptoethanol presence), 10.71% in SDS-PAGE ( -mecarptoethanol absence) and 57.769% in Native-PAGE ( -mecarptoethanol presence). V. unguiculata unguiculata sub- specie sesquipedalis and P. vulgaris showed the highest similarity index (94.12%) while M. pruriens and the two species V. unguiculata unguiculata sub- specie unguiculata and V. unguiculata showed the lowest (22.2%) in Native-PAGE. Also, V. unguiculata unguiculata and V. unguiculata unguiculata sub- specie sesquipedalis showed the highest similarity index (72.72%) while P. vulgaris and C. cajan showed the lowest (0.00%) in SDS-PAGE. Cluster analysis showed that water soluble proteins in V. unguiculata unguiculata sub- specie unguiculata and C. cajan; V. unguiculata unguiculata sub- specie sesquipedalis and M. pruriens are closely related to each other. The grains contained proteins with molecular weights in the range of 20-28 kda. This study indicated that the numerical analysis of seed protein profiles offer no concrete answer to the identity of the bean species studied, however, the method provided extra banding pattern for the discrimination of these bean species consumed in Nigeria. Key words: Legumes seeds Grains/beans Native-PAGE SDS-PAGE Genetic diversity Seed storage proteins INTRODUCTION Grain legumes are important sources of food proteins. In many regions of the world, legume seeds are the unique protein supply in the diet of humans and livestock [1], thus, they are usually referred to as poor man meat [2]. Very often they represent a necessary supplement to other protein sources [3]. Therefore, the dietary importance of legume seeds is expected to grow in the years for the protein (and other nutrients) demand of the increasing world population and the need of reducing the risks related to consumption of animal food sources, especially in the developed countries [4, 5]. In addition, legumes replenish soil nitrogen because nodules on their root hairs contain nitrogen-fixing bacteria, which make them important in crop rotation [6]. Well known grain legumes include beans, lentils, lupins, peas and peanuts and are cultivated for their seeds, also known as pulses [7, 8]. Legume grains cultivated and consumed in Nigeria are annuals which are usually creepers or climbers are thought to have originated from Latin America. They are available all year round in Nigeria where a substantial Corresponding Author: F.C. Ezebuo, Department of Biochemistry, Faculty of Natural Sciences, Anambra State University, Uli, Nigeria. 154

quantity is cultivated in the northern part of the country by inter-planting them with crops such as maize, sorghum, sweet potatoes, coffee, cotton and yam [2]. Today, mostly domesticated populations and modern breed bean varieties are grown [2, 9]. Genetic diversity is important for improving any crop species. An important understanding of the magnitude and pattern of genetic diversity in crop plant has important implications in breeding programs and for conservation of genetic resources [10]. Genotyping of different species is necessary for characterization of different accession of crop germplasm, testing varietal purity and registration of newly developed cultivars [11]. There are numerous techniques for assessing the genetic variability and relationship, however, electrophoretic characterization of seed storage proteins remains a valid method to varietal identification and to classify plant varieties [12, 13]. Usually the electrophoretic mobility of proteins has been used to study relationships at the species and subspecies levels [14]. Storage seed proteins are suitable genetic markers because they are highly polymorphic, their polymorphism is genetically determined and the molecular sources of their polymorphism are known, they are not sensitive to environmental fluctuations, are conservative and their banding pattern is very stable which are added advantages for been used for cultivars identification purposes in crops [15]. Seed storage protein profiling based on SDS-PAGE can be employed for various purposes, such as characterization of germplasm [16, 17], varietal identification [18], biosynthetic analysis and the determination of genetic diversity and phylogenetic relationship between different species [13, 15, 19, 20]. Electrophoretic analyses are simple and inexpensive which is added advantage for use in practical plant breeding [15]. Genetic diversity of seed storage proteins via SDS-PAGE has been reported for wild and cultivated rice [21], lima bean [22], Phaseolus vulgaris [23] and chickpea [10, 24]. Presently, there are limited if not no information on the genetic diversity and phylogenetic relationship between the different species of legume grains cultivated in Nigeria. The main objective of the present study was therefore aimed at evaluating the genetic diversity and relationships in six cultivated Nigerian bean species by employing seed storage protein profiling based on electrophoresis and also to ascertain whether the electrophoresis of seed proteins is suitable for verification of taxonomic data based on the morphological ones. MATERIALS AND METHODS Materials: Sodium dodecyl sulfate (SDS), - mercaptoethanol ( -ME), acrylamide, polyacrylamide, Coomassie Brilliant Blue R and molecular weight markers (14-78 kda) used were of analytical grade and were purchased from Sigma-Aldrich Chemical Co, St Louis, MO, USA. All reagents were freshly prepared unless otherwise stated and deionized water was used throughout. Sample Sources and Characteristics: The germplasms of six different species of mature legume grains were obtained from local markets in Anambra State, South- East region of Nigeria. The locations of collection and the seed characteristics are described in Table 1. All bean species were identified by Onyeukwu, C.J. from the Department of Plant Science and Biotechnology, University of Nigeria, Nsukka. The seeds were dehulled and ground well using a Waring commercial blender (Smart Grind, Black and Decker, Towson, MA, USA). The flour was defatted as described by [25] in three hexane extractions (10 ml hexane/g flour), each for 2 hours with slow stirring at 4 C. After the n-hexane layer was discarded, the flour was air-dried. With the aim to remove the impurities and to obtain a uniform product, the whole flour was sieved through a net with mesh size of 75µm. Flour samples were packaged in sealed low density polyethylene bags and stored in refrigerators prior to analysis. Methods Protein Extraction: Water soluble seed protein extracts were prepared from the six species of bean according to the method of [25] with minor modifications. A portion (30 mg) of defatted flour was mixed with 0.5 ml of deionized water in an Eppendorf tube overnight at room temperature and then centrifuged in micro-centrifuge machine (Eppendorf) at 23 000 xg for 15 min at 15 C. The residue was re-extracted twice under the same conditions. All the extracts were combined and stored at 10 C until used. Total protein was estimated as reported elsewhere [26] using bovine serum albumin as standard protein. Electrophoresis: Protein separation was carried out in vertical slabs using the TV50 Camlab Vertical Electrophoresis Unit. Gel electrophoresis of the extracted water soluble seed proteins were performed using 5% stacking and 12.5% separating gels according to the method reported elsewhere [27] with modifications. 155

Table 1: Seed characteristics of some legume grains used for electrophoretic characterizations. Species name Sample code Source Seed size Vigna unguiculata sub-specie unguiculata (Black-eyed bean) 1 Ihiala (Nkwogbe market) Bold Vigna unguiculata (Patisco) 2 Ihiala (Nkwogbe market) Small Vigna unguiculata sub-specie sesquipedalis (Yardlong bean) 3 Ihiala (Nkwogbe market) Small Phaseolus vulgaris (Red kidney bean) 4 Ihiala (Nkwogbe market) Bold Cajanus cajan (Pigeon pea) 5 Ihiala (Nkwogbe market) Small Mucuna pruiens (velvet bean) 6 Uli Bold The polymerization mixture for native PAGE version 1.4 using Unweighted Pair Group Method with contained 16.7 ml of 30% acrylamide, 10 ml of 4x resolving Arithmetic Mean (UPGMA). Average polymorphism was gel buffer (ph 8.8),13.2 ml deionized water, 200 µl of 10% calculated as a ratio of total number of polymorphic bands ammonium persulfate and 13.3 µl of TEMED. The stored (TNPB) to total number of bands (TNB) (TNPB: TNB) water- soluble seed protein extracts (10 µl) were multiplied by 100. Jaccard s similarity index was calculated solubilised in sample buffer consisting of 4x stacking gel as ratio of similar bands to total bands between two buffer (ph 6.8), deionized water; 10% glycerol and 0.1% species multiplied by 100 [10]. bromophenol Blue and 20 µl was applied to the gel. For native PAGE under reducing condition, 5% -ME RESULTS AND DISCUSSION was present in the sample buffer but was absent in non-reducing conditions. The water soluble seed protein profiles of six Nigerian The polymerization mixture for SDS PAGE contained grains species, obtained by one-dimensional Native- and 16.7 ml of 30% acrylamide, 10 ml of 4x resolving gel buffer SDS-PAGE along with molecular weight marker proteins (ph 8.8), 0.4 ml of 10% SDS, 12.8 ml of deionized water, (in the case of SDS-PAGE) in absence and presence of 200 µl of 10% ammonium persulfate and 13.3 µl of TEMED. -ME are presented in Fig. 1 and 2 respectively. The The stored water- soluble seed protein extracts (10 µl) protein patterns of the species were inspected visually were solubilised in sample buffer consisting of 4x stacking and compared with each other. Analyses of cotyledon gel buffer (ph 6.8), 10% SDS; 10% glycerol and 0.1% proteins exhibited high similarities between all bean bromophenol Blue. The mixture was heated in a genotypes in their slow-mobility range for Native-PAGE boiling-water bath for 5 min and was placed on ice until and at their fast-mobility range for SDS-PAGE. Also, the 20 µl of the mixture was applied to the gel. SDS PAGE was six bean species contained proteins mostly in the range of also carried out under reducing and non-reducing 20-28 kda (Fig. 2). conditions and the determination of the apparent molecular weight of each protein band was carried out Protein Profiling: The Native- and SDS-PAGE of seed using molecular weight marker proteins; ovotransferrin proteins of six different bean species were carried out in (78 kda), bovine serum albumin (66 kda), ovalbumin the presence and absence of -ME to investigate the (45 kda), actinidin (29 kda), -lactoglobulin (18 kda) and genetic diversity at the molecular level. Seed storage lysozyme (14 kda)) as was similarly carried out elsewhere protein profiling showed distinct polymorphism in [15, 28]. electrophoretic banding patterns that led to the detection The gels were electrophoresed using a current of of 54 and 52 polypeptide bands respectively under 15 ma and a voltage of 300 V (using Consort E844 power Native-PAGE in the absence and presence of -ME and 56 pack) until the bromophenol blue tracker dye reached the and 42 bands respectively under SDS-PAGE in the bottom of the gel. Gels were fixed and stained with 0.2% absence and presence of -ME (Table 2). Coomassie Brilliant blue R-250 in methanol: acetic acid: Out of 52 bands detected under Native-PAGE in the deionized water (5:4:1, v/v/v) overnight. Afterwards, the presence of -ME only 30 were polymorphic while 6 out gels were destained by using the solvent of the stain of the 56 bands were polymorphic under SDS-PAGE in the mixture; methanol: acetic acid glacial: deionized water absence of -ME. The rest were monomorphic. Also, no (5:4:1, v/v/v) until protein bands became clearly visible. polymorphic band was detected under Native-PAGE in the absence of -ME and SDS-PAGE in the presence of Protein Profile Analysis: Gel photographing and -ME. The average polymorphisms were 0.00% for documentation were carried out with the obtained results. Native-PAGE in the absence of -ME and SDS-PAGE in Data were coded as 0 (absent) and 1 (present). The the presence of -ME, 57.769% for Native-PAGE in dendrogram, based on the total seed protein patterns of presence of -ME and 10.71%for SDS-PAGE in the bean cultivars, was constructed with the program PyElph absence of -ME (Table 3). 156

Table 2: Data matrix of water soluble seed proteins of six bean species based on electrophoresis in the absence and presence of -ME Bean species/electrophoretic condition Native PAGE in absence of -ME Native PAGE in presence of -ME SDS-PAGE in absence of -ME SDS-PAGE in presence of -ME 1 2 3 4 5 6 1' 2' 3' 4' 5' 6' 1 2 3 4 5 6 1' 2' 3' 4' 5' 6' 1 1 1 0 1 1 0 0 1 1 1 0 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 0 0 0 0 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 1 1 1 1 0 1 1 1 1 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 0 0 0 1 0 1 0 1 0 1 1 1 0 0 1 1 1 1 1 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 0 0 0 1 0 1 1 0 1 0 0 0 1 0 0 0 1 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 1 1 1 1 1 1 0 0 0 0 1 0 1 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 1 1 1 1 1 0 0 1 0 1 0 0 0 1 0 1 1 0 1 0 0 0 1 0 1 1 1 1 1 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 0 1 0 1 1 0 1 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 1 1 0 0 0 0 0 1 1 1 1 1 0 1 0 1 1 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 1 0 0 1 1) V. unguiculata sub-specie unguiculata (Black-eyed bean), 2) V. unguiculata (Patisco), 3) V. unguiculata sub-specie sesquipedalis (Yardlong beans), 4) P. vulgaris (Red kidney bean), 5) C. cajan (Pigeon pea) and 6) M. pruriens (Velvet bean). 1-6 and 1? - 6? denote species in the absence and presence of -ME respectively Table 3: Average polymorphism of six bean species in Native- and SDS-PAGE experiments Experimental condition TNB TNPB AP (%) Native-PAGE in absence of -ME 54 0 0.0000 Native-PAGE in presence of -ME 52 30 57.69 SDS-PAGE in absence of -ME 56 6 10.71 SDS-PAGE in presence of -ME 42 0 0.0000 TNB = total number of bands, TNPB = total number of polymorphic bands and AP = average polymorphism Fig. 1: Electrophoregram of water soluble seed storage proteins using Native-PAGE in the absence of -ME (lane 1-6) and presence of -ME (lane 1'-6'). 1) V. unguiculata sub-specie unguiculata (Black-eyed bean), 2) V. unguiculata (Patisco), 3)V. unguiculata sub-specie sesquipedalis (Yardlong beans), 4) P. vulgaris (Red kidney bean), 5) C. cajan (Pigeon pea) and 6) M. pruriens (Velvet bean) 157

Fig. 2: Electrophoregram of water soluble seed storage proteins using SDS-PAGE in the absence of -ME (lane 1-6) and presence of -ME (lane 1-6 ). 1) V. unguiculata sub-specie unguiculata (Black-eyed bean), 2) V. unguiculata (Patisco), 3) V. unguiculata sub-specie sesquipedalis (Yardlong beans), 4) P. vulgaris (Red kidney bean), 5) C. cajan (Pigeon pea), 6) M. pruriens (Velvet bean) and M) molecular weight marker proteins Table 4: Similarity index of six bean species using Native-PAGE in the presence and absence of -ME. Jaccard s Similarity index (%) Native-PAGE in absence of -ME Native-PAGE in presence of -ME Sp 1 2 3 4 5 6 Sp 1' 2' 3' 4' 5' 6' 1 100 1' 100 2 75.00 100 2' 72.73 100 3 80.00 70.59 100 3' 70.00 77.78 100 4 50.00 55.56 47.06 100 4' 66.67 73.68 94.12 100 5 35.29 31.58 44.44 52.63 100 5' 52.63 58.82 80.00 87.50 100 6 22.22 22.22 31.58 30.00 57.14 100 6' 55.56 75.00 71.43 66.67 76.92 100 Sp) species, 1) V. unguiculata sub-specie unguiculata (Black-eyed bean), 2) V. unguiculata (Patisco), 3) V. unguiculata sub-specie sesquipedalis (Yardlong beans), 4) P. vulgaris (Red kidney bean), 5) C. cajan (Pigeon pea), 6) M. pruriens (Velvet bean).1-6 and 1' - 6' denote species in the absence and presence of -ME respectively The average polymorphism of 0.00%, 10.71% and similarity index was found between V. unguiculata 57.69% of water soluble proteins in the bean species unguiculata sub- specie unguiculata and C. cajan suggests presence of polymeric proteins which most (52.6%) (Table 4). Similar but not identical results probably must have evolved from monomerically distinct were obtained for seed storage protein of cultivars of proteins. It is possible that the polymeric proteins upon Sesamum indicum L [29] and cultivars of Cicer (chickpea) treatment with SDS and -ME dissociated and/or [10]. aggregated to form proteins of distinct molecular masses, For SDS-PAGE in the absence of -ME, hence 0.00% average polymorphism in SDS-PAGE V. unguiculata unguiculata sub- specie unguiculata and experiment in presence of -ME. V. unguiculata unguiculata sub- specie sesquipedalis In Native-PAGE and absence of -mecarptoethanol, showed highest similarity index (72.72%) while C. cajan V. unguiculata unguiculata sub- specie unguiculata and and M. pruriens showed lowest similarity index (14.29%). V. unguiculata unguiculata sub- specie sesquipedalis Also, SDS-PAGE in the presence of -ME, showed showed highest similarity index (80%) while lowest highest similarity index (62.50%) between V. unguiculata similarity index (22.2%) was found between V. pruriens unguiculata sub- specie sesquipedalis and M. pruriens and two other species (V. unguiculata unguiculata while P. vulgaris and C. cajan showed lowest similarity sub- specie unguiculata and V. unguiculata (Table 4). index (0.00%) (Table 5). Similar but not identical results Also, in Native-PAGE and presence of -ME, were obtained for seed storage protein of cultivars of V. unguiculata sesquipedalis and P. vulgaris showed Sesamum indicum L [29] and cultivars of Cicer (chickpea) highest similarity index (94.12%) while lowest [10]. 158

Table 5: Similarity index of six bean species using SDS-PAGE in the presence and absence of -ME Jaccard s Similarity index SDS-PAGE in absence of -ME SDS-PAGE in presence of -ME Sp 1 2 3 4 5 6 Sp 1' 2' 3' 4' 5' 6' 1 100 1' 100 2 41.67 100 2' 44.44 100 3 72.72 50.00 100 3' 50.00 22.22 100 4 36.36 60.00 33.33 100 4' 18.18 15.38 36.36 100 5 23.53 26.67 15.38 61.54 100 5' 46.15 28.57 46.15 0.00 100 6 60.87 38.11 63.16 31.58 14.29 100 6' 37.50 22.22 62.50 36.36 46.15 100 Sp) species, 1) V. unguiculata sub-specie unguiculata (Black-eyed bean), 2) V. unguiculata (Patisco), 3) V. unguiculata sub-specie sesquipedalis (Yardlong beans), 4) P. vulgaris (Red kidney bean), 5) C. cajan (Pigeon pea), 6) M. pruriens (Velvet bean).1-6 and 1?-6? denote species in the absence and presence of -ME respectively Fig. 3: UPGMA dendrogram depicting phylogenetic relationships among the six bean species based on their water soluble seed protein profiles obtained by Native-PAGE in the absence of -ME Fig. 4: UPGMA dendrogram depicting phylogenetic relationships among the six bean species based on their water soluble seed protein profiles obtained by Native-PAGE in the presence of -ME. 159

Fig. 5: UPGMA dendrogram depicting phylogenetic relationships among the six bean species based on their water soluble seed protein profiles obtained by SDS-PAGE in the absence of -ME Fig. 6: UPGMA dendrogram depicting phylogenetic relationships among the six bean species based on their water soluble seed protein profiles obtained by SDS-PAGE in the presence of -ME. The data obtained from Native- and SDS-PAGE and M. pruriens) are very closely related to each analysis were used for construction of dendrograms using other with respect to their water soluble proteins (Fig. 3). unweighted pair group mean and arithmetic average The cluster analysis in the presence of -ME revealed (UPGMA). The dendogram of the six bean species that V. unguiculata and, M. pruriens; P. vulgaris obtained by Native-PAGE in the absence of -ME and V. unguiculata sesquipedalis are very closely showed two clusters. The cluster analysis revealed that related in terms of their water soluble proteins while some bean species (V. unguiculata and V. unguiculata V. unguiculata sub-specie unguiculata occupied distinct unguiculata sub- specie unguiculata; P. vulgaris place (Fig. 4). 160

Also, the dendogram obtained by SDS-PAGE in the 2. Olusanya, J.O., 2008. Legume nuts. Essential of Food absence of -ME showed two clusters which when st and Nutrition. 1 ed Apex Books Limited, Lagos, analyzed showed that V. unguiculata, V. unguiculata pp: 95-96. sub-specie sesquipedalis and C. cajan; P. vulgaris, 3. Duranti, M., 2006. Grain legume proteins and M. pruriens and V. unguiculata sub-specie unguiculata nutraceutical properties. Fitoterapia; 77: 67-82. are closely related (Fig. 5) while others V. unguiculata 4. FAO 1999. FAO Yearbook Production, pp: 53. sub-specie unguiculata and C. cajan; V. unguiculata 5. Mandal, S. and R.K. Mandal, 2000. Seed storage sub-specie sesquipedalis and M. pruriens) are very close proteins and approaches for improvement of their to each other (Fig. 6) in the presence of -ME. Also, nutitional quality by genetic engineering. Current similar but not identical results were obtained by for seed Sci., 79(5): 576-589. storage protein of cultivars of Sesamum indicum L [29] 6. Franche, C., K. Lindström and C. Elmerich, 2009. and cultivars of Cicer (chickpea) [10]. Nitrogen-fixing bacteria associated with leguminous CONCLUSION 7. and non-leguminous plants. Plant Soil., 321: 35-59. Graham, T.A. and B.E.S. Gunning, 2003. Localization of legumin and vicilin in bean cotyledon cells using Our findings indicated that electrophoresis of seed fluorescent antibodies. Nature, 228: 81-82. proteins supplied additional banding patterns for the 8. Jayasena, V. and K. Quail, 2004. Lupin: A Legume discrimination of the six investigated bean species. with a Future. Food and Beverage Asia., 12: 16-22. The average polymorphism of 0.00%, 10.71% and 57.69% 9. Apata, D.F. and A.D. Ologboho, 1994. Biochemical of water soluble proteins in the bean species suggests evaluation of some Nigerian legume seeds. Food presence of polymeric proteins which most probably Chem., 49: 333-338. must have evolved from monomerically distinct proteins. 10. Jahangir, A.D., A.K.R. Shahzada, M.K. Srivastava In Native-PAGE and SDS-PAGE and in presence and and A.W. Aijaz, 2014. Biochemical and cytological absence of -ME, the different bean species show analysis of five cultivars of Cicer (chickpea). Afri. J. different similarity index. According to the results of Biotech., 13(11): 1281-1286. gathered from this study under SDS-PAGE in the 11. Chowdhury, M.A., B. Vandenberg and T. Warkentin, absence of -ME, it can be suggested that V. unguiculata 2002. Cultivar identification and genetic sub-specie unguiculata, C. cajan, V. unguiculata relationship among selected breeding lines and sub-specie sesquipedalis and M. pruriens grown in cultivars in chickpea (Cicer arietinum L.) Euphytica, Nigeria come from a narrow gene pool. Finally, this study 127: 317-325. indicated that the numerical analysis of seed protein 12. Manella, G., S.V. Onofaro, A. Tonini and profiles were relatively sufficient as a typing tool for the V. Mangifico, 1999. Seed storage protein differentiation of bean species and thus provide useful characterization of Solanum species and of cultivars information in order to distinguish Nigerian bean lines, and androgenic lines of S. melongena L. by improvement of already existing genetic resources, SDS-PAGE. Seed Sci. Technol., 27: 23-35. assessment of genetic diversity and improve the 13. Isemura, T., N. Shiyo and M. Shigeyuki, 2001. Genetic efficiency of breeding processes. variation and geographical distribution of Azuki bean (Vigna ungularis) landraces based on the REFERENCES electrophorogram of seed storage proteins. Breed. Sci., 51: 225-230. 1. Pedalino, M., M. Paino D urzo, A. Costa, S. Grillo and 14. Scandalios, J.G. and T.R.F. Wright, 1991. Advances in R. Rao, 1990. Biochemical characterization of Cowpea Genetics Academic Press, pp: 123. seed proteins. Ng, N.Q. and L.M. Monti (ed). Cowpea 15. Sadia, M., S.A. Malik, M.A. Rabbani and S.R. Peaece, Genetic Resources: Contributions in Cowpea 2009. Electrophoretic characterization and the Exploration, Evaluation and Research from Italy and relationship between some Brassica species. the international institute of Tropical Agriculture; Electron. J. Biol., 5: 1-4. Meeting, Ibadan, Nigeria, February 6-7. Vii 200p. 16. Javid, I., A. Ghafoor and R. Anwar, 2004. Seed International Institute of Tropical Agriculture: storage protein electrophoresis in groundnut for the Ibadan, Nigeria. Illus. Maps. Paper, pp: 81-89 evaluating genetic diversity. Pak. J. Bot., 36: 25-29. 161

17. Iqbal, S.H., A. Ghafoor and N. Ayub, 2005. 24. Ghafoor, A. and M. Arshad, 2008. Seed protein Relationship between SDS-PAGE markers and profiling of Pisum sativum (L.) germplasm using Ascochyte blight in chickpea. Pak. J. Bot., 37: 87-96. sodium dodecyl sulphate polyacrylamide gel 18. Sheidai, M., A. Hamta, A. Jaffari and M.R. Noori- electrophoresis (SDS-PAGE) for investigation of Daloli, 2000. Morphometric and seed protein studies biodiversity. Pak. J. Bot., 40(6): 2315-2321. of Trifolium species and cultivars in Iran. Pl. Genet. 25. Sammour, R. H., M.N. EI-Shourbagy, A.M. Abo- Resour. Newsl., 120: 52-54. Shady and A.M. Abasary, 1995. Characterization of 19. Sammour, R.H., 1991. Using electrophoretic Sunflower Seed Proteins by Electrophoretic techniques in varietal identification, biosystematic Techniques. Arab Gulf. J. Scient. Res., 13(3): 591-604. analysis, phylogenetic relations and genetic 26. Lowry, O.H., N.J. Rosebrough, A.L. Farr and resources management. J. Islam. Acad. Sci., R.J. Randall, 1951. Protein measurement with the Folin 4: 221-226. Phenol reagent. J. Biol Chem., 193(1): 265-275. 20. Ghafoor, A., Z. Ahmad, A.S. Qureshi and M. Bashir, 27. Laemmli, U.K., 1970. Cleavage of structural proteins 2002.Genetic relationship in Vigna mungo (L.) Hepper during the assembly of the head of bacteriophage and V. radiate (L.) Wilczek based on morphological T4.Nature, 227: 680-685. traits and SDS-PAGE. Euphytica., 123: 367-378. 28. Sanjeev, R., M. Rajesh, B. Madhuri and 21. Thanh, V.O.C. and Y. Hirata, 2002. Seed storage P.V.R. Narendra Babu, 2012. Comparative protein diversity of three rice species in the Mekong evaluation of protein extraction methods from few Delta. Biosph. Conservation, 4: 59-67. leguminous seeds. Inter. J. of Adva. Biotech. and 22. Lioi, L., F. Spaovoli and R. Bollini, 1999.Variation and Res., 3(2): 558-563. genomic polymorphism of lectin related protein in 29. Aejaz, A.D., R.C. Abhikshit and A. Neelakantan, lima bean (Phaseoluslanatus L.) seed. Genet. Resour. 2014. A study on seed protein profile of Indian Crop Evol., 46: 157-182. cultivars of Sesamum indicum L., Int. J. Curr. 23. Ferreira, J.J., E.A. Lvarrez, M.A. Roca and R. Giraldez, Biotechnol., 2(6): 10-17. 2000. Determination of out crossing rate of Phaseolus vulgaris L. using seed protein markers. Euphytica, 113: 259-263. 162