Sediment bacteria and archaea community analysis and nutrient fluxes in a sub-tropical polymictic reservoir
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1 The following supplement accompanies the article Sediment bacteria and archaea community analysis and nutrient fluxes in a sub-tropical polymictic reservoir Timothy J. Green 2, *, Andrew C. Barnes 1, Michael Bartkow 2, Deb Gale 2, Alistair Grinham 3 1 School of Biological Sciences, The University of Queensland, Brisbane, Queensland 4072, Australia 2 Queensland Bulk Water Supply (trading as Seqwater), 240 Margaret Street, Brisbane, Queensland 4000, Australia 1 Centre for Water Studies, School of Civil Engineering, The University of Queensland, Brisbane, Queensland 4072, Australia * t.green@uq.edu.au Aquatic Microbial Ecology 65: (2012) Supplement. Additional data on sequenced bacterial and archeal clones as well as nutrient profiles in the water column of Lake Wivenhoe Table S1. GenBank accession numbers and length (base pairs [bp]) of sequenced bacterial clones in the present study. The accession number of the closest match and identity is provided for each clone Clone Accession # (%) Match LB71 HQ Uncultured bacterium 98 AM LB72 HQ Uncultured bacterium 97 AM LB77 HQ Uncultured bacterium 95 EU LB78 HQ Uncultured bacterium 94 FJ LB85 HQ Uncultured Deltaproteobacteria 97 CU LB87 HQ Uncultured bacterium 91 FJ LT02 HQ Uncultured bacterium 83 AF LT03 HQ Uncultured Chloroflexi bacterium 88 FJ LT13 HQ Uncultured bacterium 93 GQ LT24 HQ Uncultured bacterium 97 GQ LT30 HQ Uncultured Acidobacterium 96 FJ LT35 HQ Uncultured bacterium 91 GQ LT37 HQ Uncultured bacterium 94 FJ LT39 HQ Uncultured Bacteroidetes 96 DQ LT44 HQ Uncultured Alphaproteobacteria 97 DQ LT45 HQ Uncultured Deltaproteobacteria 94 FJ LT47 HQ Uncultured Desulfobacteraceae 97 FJ LT49 HQ Uncultured Deltaproteobacteria 97 FJ LT56 HQ Uncultured bacterium 97 GU LT69 HQ Uncultured bacterium 86 EU LT70 HQ Uncultured Syntrophorhabdaceae 96 FJ LT76 HQ Uncultured bacterium 90 DQ LT77 HQ Uncultured bacterium 97 AB LT79 HQ Uncultured bacterium 89 EU LT82 HQ Uncultured bacterium 91 FJ LT89 HQ Uncultured bacterium 98 GQ PB05 HQ Uncultured bacterium 96 EF688191
2 Clone Accession # (%) Match PB14 HQ Uncultured bacterium 92 AB PB25 HQ Uncultured Cytophagales 97 FJ PB34 HQ Uncultured Acidobacterium 96 AY PB35 HQ Uncultured bacterium 93 AB PB40 HQ Uncultured bacterium 93 GQ PB41 HQ Uncultured bacterium 92 AM PB44 HQ Uncultured Deltaproteobacteria 94 FJ PB52 HQ Uncultured Deltaproteobacteria 91 FJ PB58 HQ Uncultured bacterium 91 FJ PB66 HQ Uncultured Verrucomicrobia 98 DQ PB67 HQ Uncultured bacterium 97 EF PB69 HQ Uncultured bacterium 94 GQ PB74 HQ Uncultured Acidobacterium 97 FJ PB79 HQ Uncultured Planctomycetes 86 DQ PB80 HQ Uncultured bacterium 96 FJ PB87 HQ Uncultured bacterium 81 EU PT08 HQ Uncultured bacterium 95 GU PT13 HQ Uncultured Acidobacterium 97 FJ PT14 HQ Methymicrobium sp. 94 EF PT15 HQ Uncultured Deltaproteobacteria 97 DQ PT17 HQ Uncultured Methylococcales 94 FJ PT18 HQ Uncultured Deltaproteobacteria 95 DQ PT19 HQ Uncultured bacterium 89 FJ PT22 HQ Uncultured Cytophagales 97 FJ PT23 HQ Uncultured Deltaproteobacteria 95 FJ PT25 HQ Uncultured Clostridiales bacterium 93 AB PT30 HQ Uncultured bacterium 94 AB PT33 HQ Uncultured bacterium 98 HM PT41 HQ Uncultured Chloroflexi bacterium 95 EU PT42 HQ Uncultured bacterium 97 AB PT43 HQ Uncultured Methylococcales 95 FJ PT45 HQ Uncultured bacterium 98 AB PT47 HQ Uncultured bacterium 93 EU PT48 HQ Uncultured bacterium 93 AY PT49 HQ Uncultured Deltaproteobacteria 98 FJ PT50 HQ Uncultured bacterium 93 AY PT53 HQ Uncultured Saprospiraceae 97 EF PT59 HQ Uncultured bacterium 97 GU PT60 HQ Uncultured Deltaproteobacteria 98 DQ PT66 HQ Uncultured Acidobacterium 85 FJ PT67 HQ Uncultured Planctomycetes 89 EF PT75 HQ Uncultured Flammovirgaceae 93 FJ PT76 HQ Uncultured Deltaproteobacteria 97 FJ PT81 HQ Uncultured Desulfobacteraceae 97 FJ PT83 HQ Uncultured Cytophagales 97 FJ PT84 HQ Uncultured bacterium 95 FJ PT85 HQ Uncultured bacterium 91 GU PT87 HQ Uncultured Deltaproteobacteria 98 FJ PT89 HQ Uncultured Bacteroidetes 98 EU PT90 HQ Uncultured Deltaproteobacteria 98 EF PT92 HQ Meiothermus cerbereus 91 Y13595 PT95 HQ Bacillus sp. 98 AY
3 Clone Accession # (%) Match rpb34 HQ Vogesella sp. 98 GQ rpb35 HQ Uncultured bacterium 95 EU rpb36 HQ Uncultured Methylococcales 96 FJ rpb38 HQ Uncultured Clostridium 91 AY rpb45 HQ Uncultured candidate division OP1 98 FJ rpb46 HQ Uncultured bacterium 95 AY rpb47 HQ Uncultured Acidobacterium 93 AY rpb48 HQ Cylindrospermopsis raciborskii 99 EU rpb52 HQ Uncultured bacterium 92 EU rpb56 HQ Uncultured bacterium 92 FJ rpb60 HQ Uncultured Actinobacterium 92 EU rpb62 HQ Pseudomonas putida 99 FJ rpb63 HQ Uncultured bacterium 99 AB rpb71 HQ Uncultured candidate division OP1 97 FJ rpb73 HQ Uncultured candidate division OP11 93 DQ rpb75 HQ Uncultured bacterium 97 FJ rpb79 HQ Uncultured bacterium 97 DQ rpb84 HQ Uncultured bacterium 95 EF rpb87 HQ Uncultured Chloroflexi bacterium 92 DQ rpb89 HQ Uncultured bacterium 96 AB rpb90 HQ Uncultured bacterium 96 DQ rpt02 HQ Uncultured bacterium 93 GU rpt06 HQ Uncultured bacterium 95 EU rpt15 HQ Uncultured candidate division OP1 97 FJ rpt17 HQ Uncultured Chloroflexi bacterium 97 FJ rpt28 HQ Uncultured bacterium 94 GQ rpt34 HQ Uncultured bacterium 97 GU rpt38 HQ Uncultured bacterium 92 EU rpt43 HQ Uncultured bacterium 91 AY rpt46 HQ Uncultured bacterium 93 DQ rpt55 HQ Uncultured bacterium 96 DQ rpt56 HQ Uncultured bacterium 93 GU rpt58 HQ Uncultured Chloroflexi bacterium 98 GU rpt62 HQ Uncultured bacterium 97 GQ rpt64 HQ Uncultured bacterium 96 AB rpt69 HQ Methylocaldum sp. 95 AJ rpt70 HQ Uncultured bacterium 92 FJ rpt75 HQ Uncultured bacterium 96 FJ rpt87 HQ Uncultured bacterium 91 GQ
4 Table S2. GenBank accession numbers and length (bp) of sequenced archaeal clones in the present study. The accession number of the closest match and identity is provided for each clone Clone GenBank (%) Match LBA03 HQ Uncultured archaeon 98 EU LBA04 HQ Uncultured archaeon 98 HM LBA20 HQ Uncultured Methanolinea 96 AB LBA28 HQ Uncultured archaeon 94 DQ LBA29 HQ Uncultured Methanomicrobiales 98 CU LBA30 HQ Uncultured Methanomicrobiales 100 CU LBA31 HQ Uncultured archaeon 99 DQ LBA34 HQ Uncultured Euryarchaeota 98 AJ LBA36 HQ Uncultured archaeon 87 FJ LBA47 HQ Uncultured archaeon 99 EU LBA51 HQ Methanosaeta sp. 98 AY LBA66 HQ Uncultured archaeon 99 DQ LBA67 HQ Uncultured archaeon 97 AB LBA75 HQ Uncultured archaeon 90 EU LBA76 HQ Uncultured archaeon 99 EU LBA77 HQ Uncultured archaeon 99 AB LBA83 HQ Uncultured Methanomicrobiales 99 CU LTA04 HQ Uncultured archaeon 98 FJ LTA05 HQ Uncultured archaeon 99 FJ LTA06 HQ Uncultured archaeon 96 FJ LTA10 HQ Uncultured archaeon 99 FJ LTA11 HQ Uncultured archaeon 93 FJ LTA12 HQ Uncultured archaeon 96 GU LTA14 HQ Uncultured archaeon 81 EF LTA22 HQ Uncultured archaeon 99 FJ LTA23 HQ Uncultured archaeon 99 DQ LTA25 HQ Uncultured archaeon 94 EU LTA38 HQ Uncultured archaeon 97 EF LTA44 HQ Uncultured archaeon 96 EU LTA53 HQ Uncultured archaeon 98 FJ LTA60 HQ Uncultured archaeon 97 AY LTA61 HQ Uncultured archaeon 99 FJ LTA72 HQ Uncultured archaeon 98 FJ LTA82 HQ Uncultured archaeon 98 EU PBA05 HQ Uncultured archaeon 99 FJ PBA34 HQ Uncultured archaeon 98 FJ PBA38 HQ Uncultured Methanomicrobiales 98 FJ PBA39 HQ Uncultured archaeon 98 FN PBA50 HQ Uncultured archaeon 95 HM PBA66 HQ Uncultured archaeon 97 EU PBA68 HQ Uncultured archaeon 98 AF PBA69 HQ Uncultured archaeon 99 GU PTA10 HQ Uncultured archaeon 98 AF PTA12 HQ Uncultured archaeon 94 FJ PTA17 HQ Uncultured archaeon 98 FJ PTA20 HQ Uncultured archaeon 96 EU PTA21 HQ Uncultured archaeon 93 DQ PTA32 HQ Uncultured archaeon 98 HM PTA34 HQ Uncultured archaeon 96 AJ PTA39 HQ Uncultured archaeon 97 EU
5 Clone GenBank (%) Match PTA54 HQ Uncultured archaeon 97 EU PTA55 HQ Uncultured archaeon 98 Fj PTA62 HQ Uncultured Methanomicrobiales 98 GU PTA63 HQ Uncultured Methanomicrobiales 99 CU PTA65 HQ Uncultured archaeon 98 EU PTA70 HQ Uncultured Methanosaeta sp. 98 GU PTA79 HQ Uncultured archaeon 98 AF PTA80 HQ Uncultured archaeon 99 FJ PTA91 HQ Uncultured archaeon 99 AB PTA92 HQ Uncultured Euryarchaeota 89 DQ rpba05 HQ Uncultured Methanolinea 96 AB rpba15 HQ Uncultured archaeon 97 EU rpba16 HQ Uncultured archaeon 97 FJ rpba17 HQ Uncultured archaeon 85 AJ rpba20 HQ Uncultured archaeon 99 FJ rpba52 HQ Uncultured archaeon 92 EF rpba62 HQ Uncultured archaeon 86 FJ rpba64 HQ Uncultured archaeon 96 FJ rpba70 HQ Uncultured Euryarchaeota 81 AB rpta01 HQ Uncultured archaeon 98 FJ rpta07 HQ Uncultured archaeon 99 EU rpta28 HQ Uncultured archaeon 96 DQ rpta31 HQ Uncultured archaeon 99 EF rpta33 HQ Uncultured archaeon 97 GU rpta55 HQ Uncultured archaeon 99 FJ rpta65 HQ Uncultured archaeon 97 FJ rpta68 HQ Uncultured archaeon 98 FJ rpta73 HQ Uncultured Euryarchaeota 88 AY
6 Fig. S1. Water column profile of dissolved inorganic nitrogen species (NH 3 +, NO 2, NO 3 ) from Sites A and B. Water samples were collected immediately prior to sediment core collection. Means ± SE. BDL: below detection limit 6
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8 Fig. S3. Water column profile of filterable reactive phosphorus (FRP) and total phosphorus (TP) from Sites A and B. Water samples were collected immediately prior to sediment core collection. Means ± SE. BDL: below detection limit. 8
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